Publications

GKazanidis_4For individual publication lists, please visit Edinburgh Explorer Research Pages. Below are the combined publications of the Changing Oceans group from 2017.

Journal research topics our group are involved in are Managing Deep-Sea Ecosystems at Ocean Basin Scale and Marine Ecosystem Assessment of the Southern Ocean (MEASO).

2020

Puerta P, Johnson C, Carreiro-Silva M, Henry L-A, Kenchington E, Morato T, Kazanidis G, Rueda J-L, Urra J, Ross S, Gonzalez-Irusta JM, Arnaud-Haond S, Oreja C. (2020). Influence of water masses on the biodiversity and biogeography of deep-sea benthic ecosystems in the North Atlantic. Frontiers in Marine Science.

Fitzsimons JA, Branigan S, Gillies CL, Brumbaugh RD, Cheng J, DeAngelis BM, Geselbracht L, Hancock B, Jeffs A, McDonald T, McLeod I, Pogoda B, Theuerkauf S, Thomas M, Westby S, zu Ermgassen PSE (2020). Restoring shellfish reefs: global guidelines for practitioners and scientists. Conservation Science and Practice.

Morato T, Gonzalez-Irusta JM, Dominguez-Carrio C, Wei C-L, Davies A, Sweetman A, Taranto GH, Beazley L, Garcia-Alegre A, Grehan A, Laffargue P, Murillo FJ, Sacau M, Vaz S, Kenchington E, Arnaud-Haond S, Callery O, Chimienti G, Cordes E, Egilsdottir H, Freiwald A, Gasbarro R, Guttierez-Zarate C, Gianni M, Gilkinson K, Wareham Hayes VE, Hebbeln D,   Hedges K, Henry L-A, Johnson D, Koen-Alonso M, Lirette C, Mastrototaro F, Menot L, Molodtsova T, Duran Munoz P, Orejas C, Pennino Grazia M, Puerta P, Ragnarsson SA, Ramiro-Sanchez B, Rice J, Rivera J, Roberts JM, Ross SW, Rueda JL, Sampaio I, Snelgrove P, Stirling D, Treble MA, Urra J, Vad J, van Oevelen D, Watling L, Walkusz W, Wienberg C, Woillez M, Levin LA, Carreiro-Silva M. (2020). Climate-induced changes in the suitable habitat of cold-water corals and commercially important deep-sea fishes in the North Atlantic. Global Change Biology. https://onlinelibrary.wiley.com/doi/epdf/10.1111/gcb.14996

Sasmito SD, Sillanpaa M, Hayes MA, Bachri S, Saragi-Smitto MF, Sidik F, Hanggara B, Mofu, WY, Rumbiak VI, Hendri, Taberima S, Suhaemi, Nugrohio JD, Pattiasina TF, Widagti N, Barakalla, Rahajoe JS, Hartantri H, Nikijuluw V, Jowey RN, Heatubun C, zu Ermgassen P, Worthington TA, Howard J, Lovelock CE, Friess DA, Hutley LB, Murdiyarso D. (2020). Mangrove blue carbon stocks and dynamics are controlled by hydrogeomorphic settings and land-use change. Global Change Biology. https://onlinelibrary.wiley.com/doi/abs/10.1111/gcb.15056

Gillies CL, CAstine SA, Alleway HK, Crawford C, Fitzsimons JA, Hancock B, Koch P, McAfee D, McLeod IM, zu Ermgassen (2020). Conservation status of oyster reef ecosystem of southern and eastern Australia. Global Ecology and Conservation. In press. https://www.sciencedirect.com/science/article/pii/S2351989419305554

2019 

Howell KL, Davies JS, Allcock AL, Braga-Henriques A, Buhl-Mortensen P, Carreiro-Silva M, Dominguwz-Carrio C, Durden JM, Foster NL, Game CA, Hitchin B, Horton T, Hosking B, Jones DOB, Mah C, Laguionie Marchais C, Menot L, Morato T, Pearman TRR, Piechaud N, Ross RE, Ruhl HA, Saeedi H, Stefanoudis PV, Taranto GH, Thompson MB, Taylor JR, Tyler P, Vad J, Victorero L, Vieira RP, Woodall LC, Xavier JR, Wagner D (2019). A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses. PLoS ONE 14(12): e0218904. https://doi.
org/10.1371/journal.pone.0218904.

zu Ermgassen PSE, Grove T, Nagelkerken I (in press). Global affiliation of fishes and invertebrates with mangrove habitats. Bulletin of Marine Science. Preprint available here: https://www.ingentaconnect.com/content/umrsmas/bullmar/pre-prints/content-bms_9537

Barnhill KA, Bahr KD (2019) Coral Resilience at Malauka’a Fringing Reef, Kane’ohe Bay, O’ahu after 18 years. Journal of Marine Science and Engineering 7, 311. doi:10.3390/jmse7090311.

Gebruk A, Borisova PB, Glebova MA, Basin AB, Simakov MI, Shabalin NV, Mokievsky VO (2019) Macrozoobenthos of the shallow waters of Pechora Bay (SE Barents Sea). Nature Conservation Research 4:1-11. http://ncr-journal.bear land.org/uploads/59eaa990af804ecaa346bfd9ca7eaf12.pdf

Vad J, Kazanidis G, Henry L-A, Jones DOB, Gates AR, Roberts JM (2019) Environmental controls and anthropogenic impacts on deep-sea sponge grounds in the Faroe-Shetland Channel, NE Atlantic: the importance of considering spatial scale to distinguish drivers of change. ICES Journal of Marine Science. doi:10.1093/icesjms/fsz185

Kazanidis G, Bourgeois S, Witte UFM (2019) On the effects of acid pre-treatment on the elemental and isotopic composition of lightly- and heavily-calcified marine invertebrates. Ocean Science Journal 54: 257-270. dx.doi.org/10.1007/s12601-019-0014-x.

M Gray, zu Ermgassen PSE, Gair JR, Langdon C, Lemagie E, Lerkzak J (2019) Spatially explicit estimates of in situ filtration by native oysters to augment ecosystem services during restoration. Estuaries and Coasts doi: 10.1007/s12237-019-00515-3

Hancock B, zu Ermgassen PSE (2019) Enchanced production of finfish and large crustaceans by bivalve reefs. Book Chapter in Goods and Services of Marine Bivalves ,Smaal et al. (eds) Springer

McLeod I, zu Ermgassen P, Gillies C, Hancock B, Humphries A (2019) Can bivalve habitat restoration improve degraded estuaries?Book Chapter in Coasts and Estuaries- The future  Wolanski, E., Day, J., Elliot, M. (eds) Elsevier

Orejas C, Taviani M, Ambroso S, Andreou V, Bilan M, Bo M, Brooke S, Buhl-Mortensen P, Cordes E, Dominguez-Carrió C, Ferrier-Pagès C, Godinho A, Gori A, Grinyó J, Gutiérrez-Zárate C, Hennige S, Jiménez C, Larsson AI, Lartaud F, Lunden J, Maier C, Maier S, Movilla J, Murray F, Peru E, Purser A, Rakka M, Reynaud S, Roberts JM, Siles P, Strömberg SM, Thomsen L, van Oevelen D, Veiga A, Carreiro-Silva M (2019) Cold-water corals in aquaria: advances and challenges. A focus on the Mediterranean. In: Orejas C, Jiménez C (eds). Mediterranean Cold-Water Corals: Past, Present and Future. Coral Reefs of the World 9. Springer pp. 435-471

Canonico G, Buttigieg PL, Montes E, Muller-Karger FE, Stepien C, Wright D, Benson A, Helmuth B, Costello M, Sousa-Pinto I, Saeedi H, Newton J, Appeltans W, Bednaršek N, Bedrossy L, Best BD, Brandt A, Goodwin KD, Iken K, Marques AC, Miloslavich P, Ostrowski M, Turner W, Achterberg EP, Barry T, Defeo O, Bigatti G, Henry L-A, Ramiro-Sánchez B, Durán P, Morato T, Roberts JM, García-Alegre A, Cuadrado MS, Murton B (2019) Global observational needs and resources for marine biodiversity. Frontiers in Marine Science 6: 367

Murray F, De Clippele LH, Hiley A, Wicks L, Roberts JM, Hennige S (2019) Multiple feeding strategies in the cold-water coral Lophelia pertusa. Journal of the Marine Biological Association of the UK 1-3 https://doi.org/10.1017/S0025315419000298

Ramiro-Sánchez B, González-Irusta JM, Henry L-A, Cleland J, Yeo I, Xavier JR, Carreiro-Silva M, Sampaio I, Spearman J, Victorero L, Messing CG, Kazanidis G, Roberts JM, Murton B (2019) Characterization and mapping of a deep-sea sponge ground on the Tropic Seamount (Northeast tropical Atlantic): implications for spatial management in the High Seas. Frontiers in Marine Science 6: 278

Kazanidis G, Vad J, Henry L-A, Neat F, Berx B, Georgoulas K, Roberts JM (2019) Distribution of deep-sea sponge aggregations in an area of multisectoral activities and changing oceanic conditions. Frontiers in Marine Science 6: 163

De Clippele LH, Huvenne VAI, Molodtsova TN, Roberts JM (2019) The diversity and ecological role of non-scleracinian corals (Antipatharia and Alcyonacea) on scleractinian cold-water coral mounds. Frontiers in Marine Science 6: 184

La Beur L, Henry L-A, Kazanidis G, Hennige S, McDonald A, Shaver M, Roberts JM (2019) Baseline assessment of marine litter and microplastic ingestion by cold-water coral reef benthos at the East Mingulay Marine Protected Area (Sea of the Hebrides, western Scotland). Frontiers in Marine Science 6: 80

Johnson D, Barrio Froján C, Neat F, van Oevelen D, Stirling D, Gubbins M, Roberts JM (2019) Rockall and Hatton:  resolving a super wicked marine governance problem in the high seas of the Northeast Atlantic Ocean. Frontiers in Marine Science 6: 69

Fox AD, Corne DW, Mayorga Adame CG, Polton JA, Henry L-A, Roberts JM (2019) An efficient multi-objective optimisation method for use in the design of marine protected area networks. Frontiers in Marine Science 6: 17

 

2018

Liefmann S, Järnegren J, Johnsen G, Murray, F (2018) Eco-physiological responses of cold-water soft corals to anthropogenic sedimentation and particle shape. Journal of Experimental Marine Biology and Ecology 504: 61-71.

Kazanidis G, van Oevelen D, Veuger B, Witte UFM (2018) Unravelling the versatile feeding and metabolic strategies of the cold-water ecosystem engineer Spongosorites coralliophaga (Stephens, 1915) Deep-Sea Research I 141: 71-82

Kamenos NA, Hennige SJ (2018). Reconstructing four centuries of temperature-induced coral bleaching on the Great Barrier Reef. Frontiers in Marine Science: Coral Reefs: 15

Kamenos NA, Hennige SJ (2018) The Great Barrier Reef has been bleaching for at least 400 years but it’s getting worse. The Conversation

Harborne R, Green AL, Peterson NA, Beger M, Golbuu Y, Houk P, Spalding MD, Taylor BM, Terk E, Treml EA, Victor S, Vigliola L, Williams ID, Wolff NH, zu Ermgassen P, Mumby PJ (2018) Modelling and mapping regional-scale patterns of fishing impact and fish stocks to support coral-reef management in Micronesia. Diversity and Distribution 24: 1729-1743. DOI:10.1111/ddi.12814

Sanderman Tomislav H, Fiske G, Solvik K, Adame M, Benson L, Bukoski J, Carnell P, Cifuentes-Jara M, Donato D, Duncan C, Eid E, zu Ermgassen P, Ewers Lewis C, Glass L, Gress S, Jardine S, Jones T, Macreadie P, Nsombo E, Rahman Md. M, Sanders C, Spalding M, Landis E (2018) A global map of mangrove forest soil carbon at 30 m spatial resolution. Environmental Research Letters 13: 055002 doi:10.1088/1748-9326/aabe1c

Evans T, zu Ermgassen PSE, Amano T, Peh KSH (2018) Does bad governance play a role in the distribution of alien invasive species? Ecology and Evolution DOI:10.1002/ece3.3744

Brooker E, Devenport E, Hopkins CR, Hennige S, Roberts JM, Duncan C (2018) Scotland as a case study for how benefits of marine ecosystem services may contribute to the commercial fishing industry. Marine Policy 93: 271-283

Musco L, Tomás Vega Fernández TV, Erik Caroselli E, Roberts JM, Badalamenti F (2018) Walls of death: cooperation allows small polyps of a stony coral to predate on large jellyfish. Ecology 99: 2400-2401

Murray F, Needham K, Gormley K, Rouse S, Coolen JWP, Billet D, Dannheim D, Birchenough SNR, Hyder K, Heard R, Ferris JS, Holstein JM, Henry L-A, McMeel O, Calewaert J-B, Roberts JM (2018) Data challenges and opportunities for environmental management of North Sea oil and gas decommissioning in an era of blue growth. Marine Policy 97: 130-138

Henry L-A, Mayorga-Adame CG, Fox AD, Polton JA, Ferris JS, McLellan F, McCabe C, Kutti T, Roberts JM (2018) Ocean sprawl facilitates dispersal and connectivity of protected species. Nature Scientific Reports 8: 11346

Vad J, Kazanidis G, Henry L-A, Jones D, Tendall O, Christiansen S, Henry T, Roberts JM (2018) Potential impacts of offshore oil and gas activities on deep-sea sponges and the habitats they form. Advances in Marine Biology 79: 33-60

Diz D, Johnson D, Riddell M, Rees S, Battle J, Gjerde K, Hennige S, Roberts JM (2018) Mainstreaming marine biodiversity into the SDGs: the role of Other Effective Area-Based Conservation Measures (SDG 14.5). Marine Policy 93: 251-261

De Clippele LH, Huvenne VAI, Orejas C, Lundälv T, Fox A, Hennige SJ, Roberts JM (2018) The effect of the local hydrodynamics on the spatial extent and morphology of cold-water coral habitats at the Tisler Reef, Norway. Coral Reefs 37: 253-266

 

2017

Hennige SJ, Burdett HL, Perna G, Tudhope AW, Kamenos NA (2017) The potential for coral reef establishment through free-living stabilisation. Scientific Reports: 13322

Evans L, Hennige SJ, Willoughby N, Adeloye AJ, Skroblin M, Gutierrez T (2017) Effect of organic carbon enrichment on the treatment efficiency of primary settled wastewater by Chlorella vulgaris. Algal Research 24: 368-377

Paillex A, Castella E, zu Ermgassen P, Gallardo B, Aldridge DC (2017) Large river floodplain as a natural laboratory: non-native macroinvertebrates benefit from elevated temperatures. Ecosphere 8: e01972. DOI:10.1002/ecs2.1972

Spalding M, Burke L, Wood S, Ashpole J, Hutchison J, zu Ermgassen P (2017) Marine Policy 82: 104-113 DOI: 10.1016/j.marpol.2017.05.014

Murray F, Widdicombe S, McNeill CL. Douglas A (2017) Assessing the consequences of environmental impacts: variation in species responses has unpredictable functional effects. Marine Ecology Progress Series 583: 35-47

Murray F, Solan M, Douglas A (2017) Effects of algal enrichment and salinity on sediment particle reworking activity and associated nutrient generation mediated by the intertidal polychaete Hediste diversicolor. Journal of Experimental Marine Biology and Ecology 495: 75-82

Vad J, Orejas C, Moreno-Navas J, Findlay HS, Roberts JM (2017) Assessing the living and dead proportions of cold-water coral colonies: implications for deep-water Marine Protected Area monitoring in a changing ocean. PeerJ 5: e3705

Henry L-A, Harries D, Kingston P, Roberts JM (2017) Historic scale and persistence of drill cuttings impacts on North Sea benthos. Marine Environmental Research 129: 219-228

De Clippele L, Gafeira J, Robert K, Hennige S, Lavaleye M, Duineveld GCA, Huvenne VAI, Roberts JM (2017) Using novel acoustic and visual mapping tools to predict the small-scale spatial distribution of live biogenic reef framework in cold-water coral habitats. Coral Reefs 36: 255–268

Sweetman AK, Thurber AR, Smith CR, Levin LA, Mora C, Wei C-L, Gooday AJ, Jones DOB, Rex M, Yasuhara M, Ingels J, Ruhl HA, Frieder CA, Danovaro R, Würzberg L, Baco A, Grupe B, Pasulkax A, Meyer KS, Dunlop KM, Henry L-A, Roberts JM (2017) Global climate change effects on deep seafloor ecosystems. Elementa Science of the Anthropocene 5: DOI: https://doi.org/10.1525/elementa.203

 

2016

Fox A, Henry L-A, Corne DW, Roberts JM (2016) Sensitivity of a marine protected area network to shifts in atmospheric state and ocean circulation. Royal Society Open Science 3: 160494

Roberts JM, Murray F, Anagnostou E, Hennige S, Gori A, Henry L-A, Fox A, Kamenos N, Foster GL (2016) Cold-water corals in an era of rapid global change: are these the deep ocean’s most vulnerable ecosystems? The Cnidaria, Past, Present and Future. Springer. Goffredo S, Dubinsky Z (Eds.) pp. 593-606

Henry L-A, Stehmann M, De Clippele L, Findlay H, Golding N, Roberts JM (2016) Seamount spawning grounds of the deep-water skate Bathyraja richardsoni (Garrick 1961). Journal of Fish Biology 89: 1473–1481

Milligan RJ, Spence G, Roberts JM, Bailey DM (2016) Fish communities associated with cold-water corals vary with depth and habitat type. Deep-sea Research 114: 43-54

Orejas C, Gori A, Rad-Menéndez C, Last KS, Davies AJ, Beveridge CM, Sadd D, Kiriakoulakis K Witte U, Roberts JM (2016) Capture efficiency and feeding behaviour of the cold-water coral Lophelia pertusa: flow speed and food size make a difference. Journal of Experimental Marine Biology and Ecology 481: 34-40

Robert K, Jones DOB, Roberts JM, Huvenne VAI (2016) Improving predictive mapping of deep-water habitats: Considering multiple model outputs for Rockall Bank, Northeast Atlantic. Deep-sea Research 113: 80-89

Henry L-A, Roberts JM (2017) Global biodiversity in cold-water coral reefs. In: “Marine Animal Forests”. Rossi S, Bramanti L, Gori A, Orejas C (eds). Meteor Springer doi: 10.1007/978-3-319-17001-5_6-1

Gori A, Ferrier-Pagès C, Hennige SJ, Rottier C, Wicks L, Roberts JM (2016) Physiological response of the cold-water coral Desmophyllum dianthus to thermal stress and ocean acidification. PeerJ 4: e1606; DOI 10.7717/peerj.1606

Martin P, Goodkin NF, Stewart JA, Foster GL, Sikes EL, White HK, Hennige SJ, Roberts JM (2016) Deep-sea coral δ13C: A tool to reconstruct the difference between seawater pH and δ11B-derived calcification site pH. Geophysical Research Letters 43: 299-308

Douarin M, Elliot M, Noble SR, Moreton SG, Long D, Sinclair D, Henry L-A, Roberts JM (2016) North Atlantic ecosystem sensitivity to Holocene shifts in Meridional Overturning Circulation. Geophysical Research Letters 43: 291-298

Kazanidis G, Witte UFM (2016) The trophic structure of Spongosorites coralliophaga-coral rubble communities at two northeast Atlantic cold-water coral reefs. Marine Biology Research 12: 932-947

Kazanidis G, Henry L-A, Roberts JM, Witte U (2016) Biodiversity of Spongosorites coralliophaga (Stephens, 1915) on coral rubble at two contrasting cold-water coral reef settings. Coral Reefs 35: 193-208